PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240817.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 346aa    MW: 38814.2 Da    PI: 8.8937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240817.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13273318655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  XP_008240817.1 273 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 318
                     689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16270334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-12271320No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14272327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYNGPPASNS GTSPLIQIPQ WQTEQPQFMD SNSHQNLHSQ EHQTHQPNSG LLRFRSAPSS  60
LLANFNENSD LGLIGKNPIE GSESERLFSR FANYTHTNDS DSWPSSFQEL DDKSTVTATE  120
SRMSSQRQGY SGLPPHYPRQ SSFNGSYGLV GSAAMNHHTQ PKAVHSNLVR QSSSPAGLFS  180
NSSVQNGFQF GTWNDSSNFA EILGGMRRDQ DNDGKLFSVP QNGELENRIH LLSHHLSLPK  240
TSAEIAMEKF LQLQDSVPCK VRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ  300
TNTADMLDLA VEYIKDLQKQ FKTLSDVRAN CRCLNMQKKP VSNQIV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240817.10.0PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-102BH130_ARATH; Transcription factor bHLH130
TrEMBLM5WCM30.0M5WCM3_PRUPE; Uncharacterized protein
STRINGscaffold_403077.11e-101(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-103bHLH family protein